> PLPR0417 ..AC:AF144649.1 ..OS:Pisum sativum ..GENE:PsTopII ..PROD:topoisomerase II ..[ -200: +51] ..CDS: +121 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.27 G - 0.09 T - 0.21 C - 0.43
1 acacactgcc agaactgata caacaacaca cactcacaaa atcaccatcc
51 tcctcaccct ccatctctct ccacctgctc cctccactct caatccgccg
101 aaaaagcacc acgccggcaa ccacaaacct aatgcttcct caacctccaa
151 tctccaccct tcattcttct ccaccgttcg tgtttttatc gttgttcgtc
201 CTCACCTCCA CCCAACGACA CCAAAAATCC TGCGAGCAAA CCCTCAAGCC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00456 Mean Expected Number 0.009 +strand -20 : -15 TGTTTT
AC RSP00865 Mean Expected Number 0.007 -strand -129 : -137 GGAGAGAGA
AC RSP01343 Mean Expected Number 0.008 +strand -23 : -18 TCGTGT
Totally 3 motifs of 3 different REs have been found
Description of REs found
434. Group RE: Motif II /AC: RSP00456//OS: Pisum sativum /GENE: PSPAL2/RE: Motif II /TF: unknown
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
1227. Group RE: TCGTGT motif /AC: RSP01343//OS: Daucus carota /GENE: Dc3/RE: TCGTGT motif /TF: unknown
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