> PLPR0418 ..AC:U85646.1 ..OS:Nicotiana tabacum ..GENE:Nt59 ..PROD:putative pectate lyase Nt59 ..[ -200: +51] ..CDS: +206 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.31 C - 0.15
1 taatttatat tttgactagt tcaactttgg cgaaatatcc tcaaagcctt
51 tagaccaaag gcaatgtgac aaaatgagga atgaacttgt gatggtgatt
101 tactttagaa agaaatggat gtgcgcaagt ttcgaaattc tatgtttggt
151 gttaatcaca agtattagta tttaaacaac acttgaaaag tagaaaaacg
201 GACATTTCAT CGTTGTTGTC TCTTAGAGAC CGAGCCCCTA AGCTAAAAAG
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00860 Mean Expected Number 0.006 +strand -94 : -86 AGAAAGAAA
AC RSP01641 Mean Expected Number 0.003 +strand +14 : +23 TgTTGTCTCT
Totally 2 motifs of 2 different REs have been found
Description of REs found
796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1
1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown
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