> PLPR0420 ..AC:AY954394.1 ..OS:Oryza sativa (japonica cultivar-group) ..GENE:rubi3 ..PROD:polyubiquitin ..[ -200: +51] ..CDS:+1207 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.17 G - 0.33 T - 0.21 C - 0.29
1 ggcggcatga cctgacgcgg agttggttcc gggcaccgtc tggatggtcg
51 taccgggacc ggacacgtgt cgcgcctcca actacatgga cacgtgtggt
101 gctgccATTG Ggccgtacgc gtggcggtga ccgcaccgga tgctgcctcg
151 caccgccttg cccacgcttT ATATAGAgag gttttctctc cattaatcgc
201 ATAGCGAGTC GAATCGACCG AAGGGGAGGG GGAGCGAAGC TTTGCGTTCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00044 Mean Expected Number 0.008 +strand -86 : -76 GtACGCGTGGC
AC RSP00146 Mean Expected Number 0.002 +strand -32 : -26 TTATATA
AC RSP00202 Mean Expected Number 0.003 -strand -192 : -200 CATGCCGCC
AC RSP00204 Mean Expected Number 0.007 +strand -139 : -130 GACACGTGtC
AC RSP00204 Mean Expected Number 0.007 -strand -130 : -139 GACACGTGtC
AC RSP00479 Mean Expected Number 0.000 +strand -141 : -128 cGGACACGTGTCGC
AC RSP01152 Mean Expected Number 0.009 -strand -103 : -112 CACACGTGtC
AC RSP01256 Mean Expected Number 0.003 +strand -138 : -131 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 +strand -111 : -104 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 -strand -104 : -111 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 -strand -131 : -138 ACACGTGT
AC RSP01772 Mean Expected Number 0.005 -strand -5 : -11 TTAATGG
Totally 12 motifs of 8 different REs have been found
Description of REs found
43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1
142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
195. Group TF: ABF /AC: RSP00202//OS: Zea mays /GENE: rab28/RE: ABRE GRA /TF: ABF
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
457. Group RE: G-box /AC: RSP00479//OS: Nicotiana tabacum /GENE: ZGT/RE: G-box /TF: unknown
1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1)
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1572. Group TF: WOX11 /AC: RSP01772//OS: Oryza sativa /GENE: PR2/RE: WOX11 BS /TF: WOX11
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