> PLPR0420 ..AC:AY954394.1 ..OS:Oryza sativa (japonica cultivar-group) ..GENE:rubi3 ..PROD:polyubiquitin ..[ -200:  +51]  ..CDS:+1207 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.17   G -  0.33   T -  0.21   C -  0.29

      1  ggcggcatga cctgacgcgg agttggttcc gggcaccgtc tggatggtcg
     51  taccgggacc ggacacgtgt cgcgcctcca actacatgga cacgtgtggt
    101  gctgccATTG Ggccgtacgc gtggcggtga ccgcaccgga tgctgcctcg
    151  caccgccttg cccacgcttT ATATAGAgag gttttctctc cattaatcgc
    201  ATAGCGAGTC GAATCGACCG AAGGGGAGGG GGAGCGAAGC TTTGCGTTCT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00044   Mean Expected Number 0.008   +strand    -86 :  -76   GtACGCGTGGC
AC RSP00146   Mean Expected Number 0.002   +strand    -32 :  -26   TTATATA
AC RSP00202   Mean Expected Number 0.003   -strand   -192 : -200   CATGCCGCC
AC RSP00204   Mean Expected Number 0.007   +strand   -139 : -130   GACACGTGtC
AC RSP00204   Mean Expected Number 0.007   -strand   -130 : -139   GACACGTGtC
AC RSP00479   Mean Expected Number 0.000   +strand   -141 : -128   cGGACACGTGTCGC
AC RSP01152   Mean Expected Number 0.009   -strand   -103 : -112   CACACGTGtC
AC RSP01256   Mean Expected Number 0.003   +strand   -138 : -131   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   +strand   -111 : -104   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   -strand   -104 : -111   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   -strand   -131 : -138   ACACGTGT
AC RSP01772   Mean Expected Number 0.005   -strand     -5 :  -11   TTAATGG

  Totally      12 motifs of     8 different REs have been found


Description of REs found

   43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1
  142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
  195. Group TF: ABF /AC: RSP00202//OS: Zea mays /GENE: rab28/RE: ABRE GRA /TF: ABF
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  457. Group RE: G-box /AC: RSP00479//OS: Nicotiana tabacum /GENE: ZGT/RE: G-box /TF: unknown
 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1)
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
 1572. Group TF: WOX11 /AC: RSP01772//OS: Oryza sativa /GENE: PR2/RE: WOX11 BS /TF: WOX11

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