> PLPR0421 ..AC:AF101032.1 ..OS:Solanum melongena ..GENE:SmCP ..PROD:cysteine proteinase precursor ..[ -200: +51] ..CDS: +55 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.31 C - 0.18
1 aaatgaatag attataataa aataataaaa atacatttat taaatgcata
51 tttaatctga tttcaaaaaa aaattgtgaa atatagctac cacacgtatc
101 atgaggcgAC AATtacacgt gtcagcatca caacggctaa ctcacatacc
151 taaccatgtt ctcggagcca aTATATACTc gagtagctaa agaggagagg
201 AGAAAATATC CGCATTCATT TCTTCTTCAT TCTTCTTTTT ATTATTATTT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00340 Mean Expected Number 0.002 +strand -87 : -78 TaCACGTGTC
AC RSP00524 Mean Expected Number 0.006 +strand -86 : -80 ACACGTG
AC RSP00524 Mean Expected Number 0.005 -strand -79 : -85 ACACGTG
AC RSP01035 Mean Expected Number 0.005 +strand -84 : -78 ACGTGTC
AC RSP01256 Mean Expected Number 0.002 +strand -86 : -79 ACACGTGT
AC RSP01256 Mean Expected Number 0.002 -strand -79 : -86 ACACGTGT
AC RSP01288 Mean Expected Number 0.005 -strand -102 : -109 ATACGTGT
Totally 7 motifs of 5 different REs have been found
Description of REs found
325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
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