> PLPR0422 ..AC:AJ810175.1 ..OS:Beta vulgaris ..GENE:BvPAL ..PROD:phenylalanine ammonia lyase ..[ -200: +51] ..CDS: +147 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.34 G - 0.06 T - 0.29 C - 0.31
1 ttaatatcct aactcactaa tcaacggtca tcctttctcc caaccaaccc
51 cctttttttg tccaaaaaat aaaagaaaaa agaaaaaaaa tgatgatttt
101 aggccttgtt gttttatcgg cccaccactc tccttaccta ccacacccaa
151 catcatcttc cctcaactct atttaaagcc caactcattc tctctcctcc
201 AACAAAAAAT TAATTTTACA TACCATCACA CCAAACAACT GCTCCCTTAA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00078 Mean Expected Number 0.007 +strand -160 : -149 CaACCAACCCCC
AC RSP00174 Mean Expected Number 0.009 -strand -104 : -109 ATCATC
AC RSP00241 Mean Expected Number 0.008 +strand -176 : -171 CGGTCA
AC RSP00445 Mean Expected Number 0.004 +strand -125 : -116 AAAAAAGAaA
AC RSP00653 Mean Expected Number 0.000 +strand -13 : -3 TTCTCTCTCCT
AC RSP00865 Mean Expected Number 0.005 -strand -4 : -12 GGAGAGAGA
AC RSP01033 Mean Expected Number 0.002 +strand -150 : -141 CCTTTTTTTG
AC RSP01231 Mean Expected Number 0.010 -strand -174 : -179 CCGTTG
Totally 8 motifs of 8 different REs have been found
Description of REs found
77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown
168. Group RE: ATCATC motif /AC: RSP00174//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ATCATC motif /TF: unknown
234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown
425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204
1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown
Download This Page
Download Promoter Sequence in FASTA Format