> PLPR0422 ..AC:AJ810175.1 ..OS:Beta vulgaris ..GENE:BvPAL ..PROD:phenylalanine ammonia lyase ..[ -200:  +51]  ..CDS: +147 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.34   G -  0.06   T -  0.29   C -  0.31

      1  ttaatatcct aactcactaa tcaacggtca tcctttctcc caaccaaccc
     51  cctttttttg tccaaaaaat aaaagaaaaa agaaaaaaaa tgatgatttt
    101  aggccttgtt gttttatcgg cccaccactc tccttaccta ccacacccaa
    151  catcatcttc cctcaactct atttaaagcc caactcattc tctctcctcc
    201  AACAAAAAAT TAATTTTACA TACCATCACA CCAAACAACT GCTCCCTTAA
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00078   Mean Expected Number 0.007   +strand   -160 : -149   CaACCAACCCCC
AC RSP00174   Mean Expected Number 0.009   -strand   -104 : -109   ATCATC
AC RSP00241   Mean Expected Number 0.008   +strand   -176 : -171   CGGTCA
AC RSP00445   Mean Expected Number 0.004   +strand   -125 : -116   AAAAAAGAaA
AC RSP00653   Mean Expected Number 0.000   +strand    -13 :   -3   TTCTCTCTCCT
AC RSP00865   Mean Expected Number 0.005   -strand     -4 :  -12   GGAGAGAGA
AC RSP01033   Mean Expected Number 0.002   +strand   -150 : -141   CCTTTTTTTG
AC RSP01231   Mean Expected Number 0.010   -strand   -174 : -179   CCGTTG

  Totally       8 motifs of     8 different REs have been found


Description of REs found

   77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown
  168. Group RE: ATCATC motif /AC: RSP00174//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ATCATC motif /TF: unknown
  234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown
  425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
  958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC:  RSP01204
 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown

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