> PLPR0424 ..AC:U49977.1 ..OS:Pisum sativum ..GENE:SBP65 ..PROD:seed biotinylated protein ..[ -200: +51] ..CDS: +118 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.27 C - 0.29
1 ctttaaacat gaaaaatcta gcgtcgataa cgatccaatc attgtaattt
51 ccatttcact acgctgagtc acacaatatc atcacacgtg tgagtaataa
101 gcacacatgt cctctcccat GCAATaacct ttcatcacca acctcttcaa
151 accgccaatc ccatttccct tttaaatcaa acattctcat tctcataacc
201 ATCACAAACA CAAGTTCAAA CATCTTTAAA AACATCAAAA CAAAAACCGT
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00190 Mean Expected Number 0.004 +strand -136 : -130 TGAGTCA
AC RSP00524 Mean Expected Number 0.004 +strand -117 : -111 ACACGTG
AC RSP00524 Mean Expected Number 0.003 -strand -110 : -116 ACACGTG
AC RSP00745 Mean Expected Number 0.005 -strand -68 : -79 GAAAGGTTATTg
AC RSP01256 Mean Expected Number 0.001 +strand -117 : -110 ACACGTGT
AC RSP01256 Mean Expected Number 0.001 -strand -110 : -117 ACACGTGT
AC RSP01469 Mean Expected Number 0.004 +strand -119 : -110 TCACAcGTGT
AC RSP01469 Mean Expected Number 0.007 -strand -108 : -117 TCACAcGTGT
AC RSP01727 Mean Expected Number 0.000 +strand -119 : -108 TCACACGTGTGA
AC RSP01727 Mean Expected Number 0.000 -strand -108 : -119 TCACACGTGTGA
Totally 10 motifs of 6 different REs have been found
Description of REs found
184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
1535. Group TF: STF1/HY5 /AC: RSP01727//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (2) /TF: STF1/HY5
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