> PLPR0426 ..AC:X51595.1 ..OS:Pisum sativum ..GENE:S2 ..PROD:S2 protein ..[ -200: +51] ..CDS: +50 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.32 C - 0.17
1 gtgatgagaa atacttagag aaagtcatct atacaatcca gccattatac
51 gactatagta atattccggg atgtacacta ttattattat tgatagcttc
101 aataatttcc aaagcattat gcataagaga agcacgtggt cgatcacgtg
151 atatctctca ttcagcTATA AATAgatgat taagtagtta taggaatcat
201 TCATCAAAAG AACTAAAATC ATACACTTTA GTTTTTTTCC TCAAAGATCC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00752 Mean Expected Number 0.000 +strand -58 : -49 ATCACGTGAT
AC RSP00752 Mean Expected Number 0.000 -strand -49 : -58 ATCACGTGAT
AC RSP00978 Mean Expected Number 0.002 +strand -58 : -49 ATCACGTGaT
AC RSP00978 Mean Expected Number 0.002 -strand -49 : -58 ATCACGTGaT
AC RSP01296 Mean Expected Number 0.009 +strand -35 : -27 CTATAAATA
AC RSP01621 Mean Expected Number 0.009 +strand +22 : +31 TACACTTTaG
Totally 6 motifs of 4 different REs have been found
Description of REs found
714. Group TF: G-box binding TF /AC: RSP00752//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 4 /TF: G-box binding TF
900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22
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