> PLPR0429 ..AC:X65875.1 ..OS:Hordeum vulgare ..GENE:Itr1 ..PROD:BTI-CMe ..[ -200:  +51]  ..CDS:  +26 ..TSS:201 (+1) # Alternative TSS(s): +2 +4 +5 |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.14   T -  0.26   C -  0.28

      1  ccctccgaat attgttagca caaagctcca aattctgtca gcaaaaaagg
     51  ttatcaaagc taccctttaa tcaaaatttc catgcagcgg cactccaaca
    101  actaacagaa agtcagaaag cacttcggta cttacgatgc cagctgcttg
    151  tcacttcaca tttcacTATA TATAtacatg tgatacgcct cgcttgctcc
    201  AACAACATCC CTTCAATTTG ATAACAATGG CGTTCAAGTA CCAGCTCCTC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00355   Mean Expected Number 0.008   +strand    -98 :  -91   TAACAGAA
AC RSP01237   Mean Expected Number 0.007   +strand    -37 :  -28   CaCTATATAT
AC RSP01237   Mean Expected Number 0.007   +strand    -35 :  -26   CTaTATATAT
AC RSP01469   Mean Expected Number 0.008   -strand    -18 :  -27   TCACATGTaT
AC RSP01766   Mean Expected Number 0.000   +strand   -123 : -110   TTCCATGCAGCGGC

  Totally       5 motifs of     4 different REs have been found


Description of REs found

  340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown
 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown
 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
 1569. Group RE: RY /Group TF: FUSCA3 /AC: RSP01766//OS: Hordeum vulgare /GENE: ITR1/RE: RY /TF: FUSCA3