> PLPR0430 ..AC:Z12028.1 ..OS:Lycopersicon pimpinellifolium ..GENE:vacuolar invertase ..PROD:beta-fructofuranosidase ..[ -200: +51] ..CDS: +18 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.34 C - 0.20
1 taagtcattt caatgaagtg aaataaatga agaagtaaaa taaaaaaatt
51 aaccaaacag taagcatagt tttggtcatt ttctctaatc ccaagtgtac
101 ctcaaattat aaaagtcctt ttgttacTCA ATttcgttgg tcccagtcat
151 tttctgtgtt catcaccTAT ATATAtagca gtagactagt agcttctccc
201 ATTCTTCTAT CTTCTATTAT GGCCACTCAG TGTTATGACC CCGAAAACTC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP01014 Mean Expected Number 0.007 +strand -177 : -168 tAAATGAAGA
AC RSP01237 Mean Expected Number 0.010 -strand -23 : -32 CTaTATATAT
AC RSP01601 Mean Expected Number 0.005 -strand -178 : -185 TTTCACTT
Totally 3 motifs of 3 different REs have been found
Description of REs found
939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF
1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown
1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
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