> PLPR0432 ..AC:X78337.1 ..OS:Zea mays ..GENE:PRms ..PROD:pathogenesis-related protein ..[ -200: +51] ..CDS: +83 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.25 C - 0.27
1 ataaatgcac ctaaccgaat caaagttgcc tcaacgctat gcatgtcctg
51 ttcgtggaat tctatgcccc ttgaactcat acgtagaaaa gattggcatg
101 ccggccatat ttacgtgcaa caggactatt tttccaagca taccggagaa
151 aattcacatg ctctccacTA TAAATAgccc ccacatattt gcattataac
201 ATCCACAAAT TAAACTCACG CACACACACA ATTAGGTCAC ATACACACTT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00642 Mean Expected Number 0.007 +strand -199 : -192 TAAATGCA
AC RSP01296 Mean Expected Number 0.004 +strand -33 : -25 CTATAAATA
AC RSP01708 Mean Expected Number 0.008 +strand -33 : -24 CTATAAATAG
AC RSP01708 Mean Expected Number 0.008 -strand -24 : -33 CTATTTATAG
Totally 4 motifs of 3 different REs have been found
Description of REs found
617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN
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