> PLPR0433 ..AC:X54192.1 ..OS:Oryza sativa ..GENE:GluB-2 ..PROD:glutelin ..[ -200: +51] ..CDS: +44 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.35 C - 0.19
1 ttgttttgta tccaaaagca taagaaatga gtcatggctg agtcatgata
51 tgtagttcaa tcttgcaaaa ttgccttttt gttaagtatt gttttaacac
101 tacaagtcac atATTGTcta tacttgcaac aaacactatt accgtgtatc
151 ccaagtggcc ttttcattgc TATATAAAct agcttgatcg gtctttcaac
201 TCACATCAAT TAGCTTAAGT TTCCATTAGC AACTGCTAAT AGCTATGGCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00153 Mean Expected Number 0.001 +strand -50 : -41 CCAaGTGGCC
AC RSP00357 Mean Expected Number 0.003 +strand -4 : +4 CAACTCAC
AC RSP00522 Mean Expected Number 0.005 -strand -43 : -49 CCACTTG
AC RSP00664 Mean Expected Number 0.001 +strand -174 : -166 ATGAGTCAT
AC RSP00871 Mean Expected Number 0.004 +strand -164 : -155 GcTGAGTCAT
AC RSP01278 Mean Expected Number 0.003 +strand -174 : -166 ATGAGTCAT
AC RSP01278 Mean Expected Number 0.003 -strand -166 : -174 ATGACTCAT
Totally 7 motifs of 6 different REs have been found
Description of REs found
149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154
342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687
807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown
1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4
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