> PLPR0438 ..AC:X14058.1 ..OS:Nicotiana tabacum ..GENE:nia-1 ..PROD:nitrate reductase (EC 1.6.6.1) ..[ -200: +51] ..CDS: +89 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.31 C - 0.16
1 ctgatcccga ccctacgggc gtaaaaagtg taaatcatta gaattgtttt
51 attttgtgat gtcactattt ttttaaaatc aaaattaaat tggggtgtcg
101 atttttttgg gtcccactta tgtatagtat gggggctatg gaggcATTGA
151 gagagtccgt aacgtttcTA TATAAGgcca ccccacgcat tcacaaactt
201 CGTTCGAAAA TCAAATCTTA GAGAGAGAGA GAGAGAAATA TTTTGAGAGA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00864 Mean Expected Number 0.002 +strand +20 : +28 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.002 +strand +22 : +30 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.002 +strand +24 : +32 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.002 +strand +26 : +34 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.002 +strand +28 : +36 AGAGAGAGA
AC RSP00889 Mean Expected Number 0.003 +strand -18 : -12 CCACGCA
AC RSP01283 Mean Expected Number 0.000 +strand +21 : +37 GAGAGAGAGAGAGAGAA
AC RSP01621 Mean Expected Number 0.009 -strand -169 : -178 TACACTTTTt
Totally 8 motifs of 4 different REs have been found
Description of REs found
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF
1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22
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