> PLPR0438 ..AC:X14058.1 ..OS:Nicotiana tabacum ..GENE:nia-1 ..PROD:nitrate reductase (EC 1.6.6.1) ..[ -200:  +51]  ..CDS:  +89 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.22   T -  0.31   C -  0.16

      1  ctgatcccga ccctacgggc gtaaaaagtg taaatcatta gaattgtttt
     51  attttgtgat gtcactattt ttttaaaatc aaaattaaat tggggtgtcg
    101  atttttttgg gtcccactta tgtatagtat gggggctatg gaggcATTGA
    151  gagagtccgt aacgtttcTA TATAAGgcca ccccacgcat tcacaaactt
    201  CGTTCGAAAA TCAAATCTTA GAGAGAGAGA GAGAGAAATA TTTTGAGAGA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00864   Mean Expected Number 0.002   +strand    +20 :  +28   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   +strand    +22 :  +30   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   +strand    +24 :  +32   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   +strand    +26 :  +34   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.002   +strand    +28 :  +36   AGAGAGAGA
AC RSP00889   Mean Expected Number 0.003   +strand    -18 :  -12   CCACGCA
AC RSP01283   Mean Expected Number 0.000   +strand    +21 :  +37   GAGAGAGAGAGAGAGAA
AC RSP01621   Mean Expected Number 0.009   -strand   -169 : -178   TACACTTTTt

  Totally       8 motifs of     4 different REs have been found


Description of REs found

  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
  821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22

Download This Page
Download Promoter Sequence in FASTA Format