> PLPR0440 ..AC:X15425.1 ..OS:Cucumis sativus ..GENE:malate synthase (EC 4.1.3.2) ..PROD:malate synthase ..[ -200: +51] ..CDS: +39 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.30 C - 0.25
1 acgctattgc agttcccaat gttggcacgg aactcaataa atggtggatt
51 gggttgttat ctttttcgcg tcatcagcta ttattttcca tttggataga
101 ataccgccat caacctccat aacgataatc ttcaacattc ctatcctact
151 cacaaaatgt gcttcaTATT TATAcggaca cctaacctct ctacagaccc
201 ACCGATTACA TTTCACTTGA GGAACAACAC AGAACCAAGA TGGGATCGCT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00916 Mean Expected Number 0.006 -strand -126 : -135 GATGACGcGA
AC RSP01013 Mean Expected Number 0.008 -strand -107 : -116 CAAATGGAaA
AC RSP01346 Mean Expected Number 0.000 +strand -199 : -186 CGCTATTGCAGTTC
Totally 3 motifs of 3 different REs have been found
Description of REs found
847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
1229. Group RE: IMH5 /AC: RSP01346//OS: Cucumis sativus /GENE: ms/RE: IMH5 /TF: unknown
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