> PLPR0442 ..AC:L33677.1 ..OS:Arabidopsis thaliana ..GENE:PAL ..PROD:phenylalanine ammonia-lyase ..[ -200:  +51]  ..CDS: +127 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.35   G -  0.04   T -  0.32   C -  0.29

      1  ctccaccact aaaatccatc actcactctc catctaacgg tcatcattaa
     51  ttctcaacca actccttctt tctcactaat tttcattttt tctataatct
    101  ttatatggaa gaaaaaaaga aactagctat ctctatacgc ttacctacca
    151  acaaacacta ccaccttatt taaaccaccc ttcattcatc taattttcct
    201  CAGGAACAAA TACAATTCCT TAACCAACAA TATTACAAAT AAGCTCCTAT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00003   Mean Expected Number 0.007   -strand    -93 : -102   CCATATAAAG
AC RSP00241   Mean Expected Number 0.004   +strand   -163 : -158   CGGTCA
AC RSP00445   Mean Expected Number 0.003   +strand    -88 :  -79   AAAAAAGAaA
AC RSP00489   Mean Expected Number 0.003   +strand    -59 :  -50   TACCTACCAA
AC RSP00618   Mean Expected Number 0.005   -strand   -161 : -166   CCGTTA
AC RSP01710   Mean Expected Number 0.004   -strand    -93 : -102   CCATATAAAG

  Totally       6 motifs of     6 different REs have been found


Description of REs found

    3. Group TF: AGL3; MADS-box TF /AC: RSP00003//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CArG1 (AGL3) /TF: AGL3; MADS-box TF
  234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown
  425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
  465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown
  594. Group RE: 16 KK /AC: RSP00618//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: 16 KK /TF: unknown ||Identical REs AC:  RSP00835
 1518. Group TF: RIN /AC: RSP01710//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Intermediate /TF: RIN