> PLPR0442 ..AC:L33677.1 ..OS:Arabidopsis thaliana ..GENE:PAL ..PROD:phenylalanine ammonia-lyase ..[ -200: +51] ..CDS: +127 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.35 G - 0.04 T - 0.32 C - 0.29
1 ctccaccact aaaatccatc actcactctc catctaacgg tcatcattaa
51 ttctcaacca actccttctt tctcactaat tttcattttt tctataatct
101 ttatatggaa gaaaaaaaga aactagctat ctctatacgc ttacctacca
151 acaaacacta ccaccttatt taaaccaccc ttcattcatc taattttcct
201 CAGGAACAAA TACAATTCCT TAACCAACAA TATTACAAAT AAGCTCCTAT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00003 Mean Expected Number 0.007 -strand -93 : -102 CCATATAAAG
AC RSP00241 Mean Expected Number 0.004 +strand -163 : -158 CGGTCA
AC RSP00445 Mean Expected Number 0.003 +strand -88 : -79 AAAAAAGAaA
AC RSP00489 Mean Expected Number 0.003 +strand -59 : -50 TACCTACCAA
AC RSP00618 Mean Expected Number 0.005 -strand -161 : -166 CCGTTA
AC RSP01710 Mean Expected Number 0.004 -strand -93 : -102 CCATATAAAG
Totally 6 motifs of 6 different REs have been found
Description of REs found
3. Group TF: AGL3; MADS-box TF /AC: RSP00003//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CArG1 (AGL3) /TF: AGL3; MADS-box TF
234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown
425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown
594. Group RE: 16 KK /AC: RSP00618//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: 16 KK /TF: unknown ||Identical REs AC: RSP00835
1518. Group TF: RIN /AC: RSP01710//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Intermediate /TF: RIN
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