> PLPR0443 ..AC:L33678.1 ..OS:Arabidopsis thaliana (strain Columbia) ..GENE:PAL2 ..PROD:phenylalanine ammonia-lyase ..[ -200: +51] ..CDS: +106 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.26 G - 0.05 T - 0.35 C - 0.34
1 gttttccatt atccaccatt agatcaccaa tcttcatcca acggtcatca
51 ttaaactctc acccacccct catacttcac tttttttctc cgaaaaaatc
101 gaaaacttgt gttctctctt ctctcttctc ttgtccttac ctaacaacaa
151 cactaacatt gtccttctta tttaaacgtc tcttctctct tcttcctcct
201 CAGAAAACCA AAAACCACCA ACAATTCAAA CTCTCTCTTT CTCCTTTCAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00241 Mean Expected Number 0.006 +strand -159 : -154 CGGTCA
AC RSP00263 Mean Expected Number 0.001 +strand -166 : -158 CATCCAACG
AC RSP01043 Mean Expected Number 0.002 +strand -144 : -132 TCTCACCcACCCC
AC RSP01083 Mean Expected Number 0.006 +strand -144 : -133 TCTCACCcACCC
AC RSP01231 Mean Expected Number 0.004 -strand -157 : -162 CCGTTG
Totally 5 motifs of 5 different REs have been found
Description of REs found
234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown
255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563
967. Group RE: FP2 /AC: RSP01043//OS: Solanum tuberosum /GENE: St4cl-1/RE: FP2 /TF: unknown
1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1
1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown
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