> PLPR0443 ..AC:L33678.1 ..OS:Arabidopsis thaliana (strain Columbia) ..GENE:PAL2 ..PROD:phenylalanine ammonia-lyase ..[ -200:  +51]  ..CDS: +106 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.26   G -  0.05   T -  0.35   C -  0.34

      1  gttttccatt atccaccatt agatcaccaa tcttcatcca acggtcatca
     51  ttaaactctc acccacccct catacttcac tttttttctc cgaaaaaatc
    101  gaaaacttgt gttctctctt ctctcttctc ttgtccttac ctaacaacaa
    151  cactaacatt gtccttctta tttaaacgtc tcttctctct tcttcctcct
    201  CAGAAAACCA AAAACCACCA ACAATTCAAA CTCTCTCTTT CTCCTTTCAC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00241   Mean Expected Number 0.006   +strand   -159 : -154   CGGTCA
AC RSP00263   Mean Expected Number 0.001   +strand   -166 : -158   CATCCAACG
AC RSP01043   Mean Expected Number 0.002   +strand   -144 : -132   TCTCACCcACCCC
AC RSP01083   Mean Expected Number 0.006   +strand   -144 : -133   TCTCACCcACCC
AC RSP01231   Mean Expected Number 0.004   -strand   -157 : -162   CCGTTG

  Totally       5 motifs of     5 different REs have been found


Description of REs found

  234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown
  255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC:  RSP01563
  967. Group RE: FP2 /AC: RSP01043//OS: Solanum tuberosum /GENE: St4cl-1/RE: FP2 /TF: unknown
 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1
 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown

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