> PLPR0444 ..AC:D26058.1 ..OS:Catharanthus roseus ..GENE:cyc07 ..PROD:specifically expressed at the S phase during the cell cycle in the synchronous culture ..[ -200: +51] ..CDS: +96 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.29 C - 0.24
1 aaaaaccaac acttgaatag aaacccacca aatccagact taagagaatg
51 aaacatattg ggccctcaaa ttaactcttc ataactaatg tatgggcttt
101 caatatctag cccataacat ataggagcag acCCAATttc tccaaaccta
151 tctttatcta tacctacaac agTATATAAA cctagggttt tatatgcatt
201 TAGGGTTTTC TCTGATTGAG GCCGTTGCTG AGCTCTTCAT AGCGCTCTCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00260 Mean Expected Number 0.006 +strand -2 : +5 TTTAGGG
AC RSP00279 Mean Expected Number 0.001 +strand -1 : +8 TTAGGGTTT
AC RSP00333 Mean Expected Number 0.001 -strand -106 : -114 CCATACATT
AC RSP00369 Mean Expected Number 0.001 -strand +8 : -1 AAACCCTAA
AC RSP00642 Mean Expected Number 0.007 -strand +2 : -6 TAAATGCA
AC RSP01303 Mean Expected Number 0.001 -strand +9 : -1 aAAACCCTAA
Totally 6 motifs of 6 different REs have been found
Description of REs found
253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448
319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F
354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown
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