> PLPR0444 ..AC:D26058.1 ..OS:Catharanthus roseus ..GENE:cyc07 ..PROD:specifically expressed at the S phase during the cell cycle in the synchronous culture ..[ -200:  +51]  ..CDS:  +96 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.33   G -  0.14   T -  0.29   C -  0.24

      1  aaaaaccaac acttgaatag aaacccacca aatccagact taagagaatg
     51  aaacatattg ggccctcaaa ttaactcttc ataactaatg tatgggcttt
    101  caatatctag cccataacat ataggagcag acCCAATttc tccaaaccta
    151  tctttatcta tacctacaac agTATATAAA cctagggttt tatatgcatt
    201  TAGGGTTTTC TCTGATTGAG GCCGTTGCTG AGCTCTTCAT AGCGCTCTCT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00260   Mean Expected Number 0.006   +strand     -2 :   +5   TTTAGGG
AC RSP00279   Mean Expected Number 0.001   +strand     -1 :   +8   TTAGGGTTT
AC RSP00333   Mean Expected Number 0.001   -strand   -106 : -114   CCATACATT
AC RSP00369   Mean Expected Number 0.001   -strand     +8 :   -1   AAACCCTAA
AC RSP00642   Mean Expected Number 0.007   -strand     +2 :   -6   TAAATGCA
AC RSP01303   Mean Expected Number 0.001   -strand     +9 :   -1   aAAACCCTAA

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
  270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC:  RSP00448
  319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F
  354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
  617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format