> PLPR0447 ..AC:X53596.1 ..OS:Oryza sativa (indica cultivar-croup) ..GENE:Osgrp-1 ..PROD:glycine-rich cell wall protein ..[ -200: +51] ..CDS: +224 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.30 C - 0.18
1 atgaataaaa atagtcgtgt tagtcttacc tgatgtgcac tctaaactcg
51 attacccacg gtttttatga tactgaagcg gaggccctct tcagaagtaa
101 accacaagtg acaacacaag gttaaaaaaa atgagataat taaatatgag
151 tgagagttgt ttctggtgtt gtttgcttcg acagagcaaa atcttgccta
201 CTTTGATCGA TGACTACTTT GACTTTCTGT TTGGGCCACC GTAGAAAGAC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00125 Mean Expected Number 0.002 -strand -186 : -197 AcTATTTTTATT
AC RSP00741 Mean Expected Number 0.002 +strand -85 : -74 AcAAGGTTAAAA
AC RSP00940 Mean Expected Number 0.006 -strand +46 : +37 TTCTACGGTG
AC RSP01017 Mean Expected Number 0.006 -strand -37 : -44 AGAAACAA
Totally 4 motifs of 4 different REs have been found
Description of REs found
123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788
703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1
869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
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