> PLPR0448 ..AC:X53596.1 ..OS:Oryza sativa (indica cultivar-croup) ..GENE:Osgrp-1 ..PROD:glycine-rich cell wall protein ..[ -200: +51] ..CDS: +34 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.27 C - 0.22
1 gtagaaagac ataacagtgt acacagagat gcacagctcg tttttgactg
51 attgcaatct aacctttgaa ttgagttacc tacttactcg ttaactagag
101 cttgcctaac taatctacct acctacatgc catagttggt tagctcgcag
151 gtgtacacaa tacgcatcca aatttgacct ataaatactc agtgcaaaca
201 AGCACTTGGT ACTCATCTGC AGCACTGAAG TAAAATGGCC AGGAAGGTAA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00259 Mean Expected Number 0.010 +strand -64 : -58 TGGTTAG
AC RSP01296 Mean Expected Number 0.004 +strand -22 : -14 CTATAAATA
AC RSP01301 Mean Expected Number 0.001 +strand -22 : -13 CTATAAATAC
AC RSP01472 Mean Expected Number 0.002 +strand -87 : -77 TCTACCTACCt
Totally 4 motifs of 4 different REs have been found
Description of REs found
252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
1341. Group RE: Box-I /AC: RSP01472//OS: Pisum sativum /GENE: PsCHS1/RE: Box-I /TF: unknown ||Identical REs AC: RSP01528
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