> PLPR0451 ..AC:X57003.1 ..OS:Helianthus annuus ..GENE:GUbB2 ..PROD:polyubiquitin protein ..[ -200:  +51]  ..CDS:+1015 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.25   G -  0.11   T -  0.31   C -  0.33

      1  caggacatga gctccgtttc tagattccat gccctaccta ccgtgtggtg
     51  cacaacaacg aacccccctc attgactctc accgtacacg tgtcacgata
    101  ccatttgttg gtctcctacc acctacgtaa cattaatatT CAATccgtga
    151  ccgcctcttc ttcatcatcc TATAAATTca ccttcttatc tcttccgctt
    201  TCATTCATTC ATCATCATCA CAATTAACAA CAATTCCAAA GCAATCTTCT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00331   Mean Expected Number 0.004   +strand   -178 : -170   GATTCCATG
AC RSP00340   Mean Expected Number 0.009   +strand   -116 : -107   TaCACGTGTC
AC RSP00454   Mean Expected Number 0.001   +strand    -77 :  -67   TACGTAACATt
AC RSP00462   Mean Expected Number 0.002   -strand     -5 :  -17   GGAaGAGATAAGA
AC RSP00524   Mean Expected Number 0.006   +strand   -115 : -109   ACACGTG
AC RSP00524   Mean Expected Number 0.007   -strand   -108 : -114   ACACGTG
AC RSP00778   Mean Expected Number 0.005   -strand    +11 :   +2   TGAATGAATG
AC RSP00937   Mean Expected Number 0.002   +strand    -17 :   -5   TCTTATCTCtTCC
AC RSP01035   Mean Expected Number 0.007   +strand   -113 : -107   ACGTGTC
AC RSP01256   Mean Expected Number 0.002   +strand   -115 : -108   ACACGTGT
AC RSP01256   Mean Expected Number 0.002   -strand   -108 : -115   ACACGTGT
AC RSP01717   Mean Expected Number 0.000   +strand   -117 : -106   GTACACGTGTcA

  Totally      12 motifs of    10 different REs have been found


Description of REs found

  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown
  440. Group RE: I-box /Group TF: IBF /AC: RSP00462//OS: Lycopersicon esculentum /GENE: RBCS1; RBCS2; RBCS3A;/RE: I-box /TF: IBF
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown
  866. Group TF: GBF /AC: RSP00937//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: I box /TF: GBF
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5