> PLPR0453 ..AC:X64114.1 ..OS: Brassica napus ..GENE:ACP05 ..PROD:seed-expressed acyl carrier protein ..[ -200: +51] ..CDS: +70 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.30 C - 0.24
1 tgtctcggtt aagaccggtt tgacatggtt catttcagtt caattatgtg
51 aatctggcac gtgatatgtt taccttcaca cgaacattag taatgatggg
101 ctaatttaag acttaacagc ctagaaaggc ccatcttatt acgtaacgac
151 atcgtttaga gtgcaccaag ctTATAAATG acgacgagct acctcggggc
201 ATCACGCTCT TTGTACACTC CGCCATCTCT CTCTCCTTCG AGCACAGATC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00114 Mean Expected Number 0.005 -strand -13 : -22 CTcGTCGTCA
AC RSP00653 Mean Expected Number 0.004 +strand +27 : +37 cTCTCTCTCCT
AC RSP00864 Mean Expected Number 0.002 -strand +34 : +26 AGAGAGAGA
AC RSP00865 Mean Expected Number 0.002 -strand +36 : +28 GGAGAGAGA
AC RSP00966 Mean Expected Number 0.002 +strand -145 : -136 GGCACGTGAT
Totally 5 motifs of 5 different REs have been found
Description of REs found
112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF
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