> PLPR0455 ..AC:X77233.1 ..OS:Lycopersicon esculentum (de Ruiter 83G38) ..GENE:Adh2 ..PROD:alcohol dehydrogenase ..[ -200: +51] ..CDS: +217 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.45 G - 0.14 T - 0.29 C - 0.12
1 aattaaatat ttagaagacg ataatgacag aaatcaacgt tattttaggt
51 ataatttttg ttgtattttt gaaaaaaata atcttttttc tgcaactggt
101 tatattaagt gaacaaacaa aaaacaagta gtataaaaaa attacaagtg
151 gacataaaac aaaatgagat acagtatttg tgtttccatt ggaatattag
201 CTTGACAAAA ACTCAAACGA GCAACACAAA ACAAACAGCT AAAAAACCTG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00522 Mean Expected Number 0.004 -strand -50 : -56 CCACTTG
AC RSP00727 Mean Expected Number 0.003 +strand -1 : +6 GCTTGAC
AC RSP01195 Mean Expected Number 0.001 +strand -121 : -109 AATcTTTTTTCTG
AC RSP01751 Mean Expected Number 0.001 -strand -49 : -57 TCCACTTGT
Totally 4 motifs of 4 different REs have been found
Description of REs found
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown
1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown
1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4
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