> PLPR0456 ..AC:X14564.1 ..OS:Arabidopsis thaliana ..GENE:ats1B ..PROD:ribulose-1,5-biphosphate carboxylase small subunit (rbcS) (EC 4.1.1.39) ..[ -200: +51] ..CDS: +35 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.24 C - 0.20
1 caaagcaacc gatcaagtgg agactagtaa accatacaca atcactcatt
51 tcctcacaaa agaaagataa gataagggtg tcaacacctt tccttaatca
101 tgtggtagtg aacgagttat catgaatccc ggaccctttg atcattaggg
151 ctttttgcct cttacggttc tcacTATATA AAgatgacaa aaccaataga
201 AAAACAATTA AGCAAAAGAA GAAGAAGAAG AAGTAATGGC TTCCTCTATG
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00227 Mean Expected Number 0.005 +strand -137 : -129 AAGATAAGA
AC RSP00522 Mean Expected Number 0.009 -strand -181 : -187 CCACTTG
AC RSP00716 Mean Expected Number 0.006 +strand -13 : -5 CAAAACCAA
AC RSP00999 Mean Expected Number 0.005 +strand -30 : -20 TCACTATaTAA
AC RSP01053 Mean Expected Number 0.003 +strand -135 : -127 GATAAGATA
Totally 5 motifs of 5 different REs have been found
Description of REs found
220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown
920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3
973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1
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