> PLPR0458 ..AC:X14564.1 ..OS:Arabidopsis thaliana ..GENE:ats3B ..PROD:ribulose-1,5-biphosphate carboxylase small subunit (rbcS) (EC 4.1.1.39) ..[ -200: +51] ..CDS: +56 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.23 T - 0.23 C - 0.20
1 cccccacaag agaaaagata agataatgga gttttctgcc acgtggcctt
51 atcctagtgg tgcgtaccga taagggtgtc aacacctttc cttaatcctg
101 tggcagtaaa cgacgttatc atgaatcatg gaccctttga tcatgagggc
151 ttttcgcctt tagggggttc tcatTATATA AAgatgacaa caccagtagg
201 AAAACAAGTC AGTAAGTAAA CGAGCAAAAG AAGAAGAGAA ACAACAAGAA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00063 Mean Expected Number 0.002 +strand -163 : -154 GCCaCGTGGC
AC RSP00063 Mean Expected Number 0.003 -strand -154 : -163 GCCaCGTGGC
AC RSP00073 Mean Expected Number 0.003 +strand -163 : -154 GCCACGTGGC
AC RSP00073 Mean Expected Number 0.003 -strand -154 : -163 GCCACGTGGC
AC RSP00153 Mean Expected Number 0.003 +strand -162 : -153 CCACGTGGCC
AC RSP00153 Mean Expected Number 0.003 -strand -155 : -164 CCACGTGGCa
AC RSP00175 Mean Expected Number 0.002 +strand -161 : -154 CACGTGGC
AC RSP00175 Mean Expected Number 0.002 -strand -156 : -163 CACGTGGC
AC RSP00204 Mean Expected Number 0.003 +strand -163 : -154 GcCACGTGGC
AC RSP00204 Mean Expected Number 0.002 -strand -154 : -163 GcCACGTGGC
AC RSP00227 Mean Expected Number 0.005 +strand -186 : -178 AAGATAAGA
AC RSP00682 Mean Expected Number 0.003 +strand -163 : -154 GCCACGTGGc
AC RSP00682 Mean Expected Number 0.002 -strand -154 : -163 GCCACGTGGc
AC RSP00718 Mean Expected Number 0.002 +strand -162 : -155 CCACGTGG
AC RSP00718 Mean Expected Number 0.002 -strand -155 : -162 CCACGTGG
AC RSP00724 Mean Expected Number 0.000 +strand -184 : -154 GATAAGA-- ** bp --CACGTGGC
AC RSP01034 Mean Expected Number 0.009 +strand -160 : -154 ACGTGGC
AC RSP01034 Mean Expected Number 0.008 -strand -157 : -163 ACGTGGC
AC RSP01053 Mean Expected Number 0.003 +strand -184 : -176 GATAAGATA
Totally 19 motifs of 11 different REs have been found
Description of REs found
62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown
72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274
149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154
169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1
651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254
688. Group TF: HY5 /AC: RSP00724//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I/G-box /TF: HY5
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1
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