> PLPR0461 ..AC:X15224.1 ..OS:Nicotiana tabacum (common tobacco) ..GENE:E22 ..PROD:thaumatin-like protein ..[ -200: +51] ..CDS: +35 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.28 C - 0.18
1 taaatccgtc aagtgtaagt gcatccattc tcttgaaatt gtggatccgc
51 cagtctctat tagcgtgttt ggcacgaaat ggaaaaatga gagatggaat
101 ttATTGGcac attaataaca aggacaagaa tatcataatc tctgaaattt
151 cagagcttgt tacttgatca gctatttaaa cccatagata gtctccaaat
201 AAACACATTC TCAAGTTTAC AAAAAGAAAA AAAAAATGAA CTTCCTCAAA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00039 Mean Expected Number 0.008 +strand -167 : -157 TGAAATTGTGg
AC RSP00559 Mean Expected Number 0.004 +strand -58 : -48 TGaAATTTCAG
AC RSP00559 Mean Expected Number 0.007 -strand -49 : -59 TGaAATTTCAG
Totally 3 motifs of 2 different REs have been found
Description of REs found
38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs
535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown
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