> PLPR0462 ..AC:Z26333.1 ..OS:Hordeum vulgare ..GENE:prb1 ..PROD:pathogenesis-related protein ..[ -200:  +51]  ..CDS:  +58 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.19   T -  0.26   C -  0.24

      1  gcatgtgttg actggactag ttatcaagtt ccaaatgaga gagactcgat
     51  cgagtttcct catgcatgta cgtcttgttc gtggaattct ttgacactcc
    101  aagaaaattc cttgccatgg cgcaagactt tccacgcaag ctgcagacat
    151  ttctcgcaca aatccacTAT AAAAAcacct ctatactcaa gctatacgta
    201  CAGAAGCAAA GCTGGTATAG AGCAGGCCCA TAGAAATCAT TTATACACCG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00108   Mean Expected Number 0.003   +strand   -140 : -133   CATGCATG
AC RSP00108   Mean Expected Number 0.003   -strand   -133 : -140   CATGCATG
AC RSP00115   Mean Expected Number 0.006   +strand    +30 :  +40   ATAGAAATCAt
AC RSP00350   Mean Expected Number 0.001   -strand   -129 : -139   CGTaCATGCAT
AC RSP01058   Mean Expected Number 0.007   -strand    -32 :  -39   TAGTGGAT
AC RSP01470   Mean Expected Number 0.007   +strand   -141 : -132   TCATGCATGT
AC RSP01642   Mean Expected Number 0.004   -strand    -49 :  -58   AAATGTCTgC

  Totally       7 motifs of     6 different REs have been found


Description of REs found

  106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC:  RSP01169  RSP01452
  113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1
  335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown
  978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a
 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown