> PLPR0464 ..AC:AJ288901.1 ..OS:Dendrobium grex Madame Thong-IN ..GENE:DOMADS1 ..PROD:MADS box protein DOMADS1 ..[ -200:  +51]  ..CDS: +177 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.23   G -  0.19   T -  0.29   C -  0.29

      1  atattagcat cgtcgagatt catccgtgcg gctcccatcc actaccaaca
     51  cgtgtccttt catttattca ataatatggc tcccgcctcg gcgcctgatc
    101  ccgttgttgg ttttaggggt ttctctctct ctctctctct ctctctcctt
    151  tctctataac cacttttacc acccacaaca ctacgagagt aaaagataaa
    201  AAGGAGAAGG CAAATGGGGA AGTAGGGCAA CGAATGGGGC CTCCCCTCTT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00260   Mean Expected Number 0.009   +strand    -89 :  -83   TTTAGGG
AC RSP00653   Mean Expected Number 0.008   +strand    -62 :  -52   cTCTCTCTCCT
AC RSP00778   Mean Expected Number 0.003   -strand   -131 : -140   TGAATAAATG
AC RSP00864   Mean Expected Number 0.004   -strand    -55 :  -63   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -57 :  -65   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -59 :  -67   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -61 :  -69   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -63 :  -71   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -65 :  -73   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -67 :  -75   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -69 :  -77   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.004   -strand    -71 :  -79   AGAGAGAGA
AC RSP00865   Mean Expected Number 0.004   -strand    -53 :  -61   GGAGAGAGA
AC RSP01015   Mean Expected Number 0.009   -strand   -135 : -144   tAAATGAAAG
AC RSP01058   Mean Expected Number 0.006   -strand   -157 : -164   TAGTGGAT
AC RSP01256   Mean Expected Number 0.003   +strand   -153 : -146   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   -strand   -146 : -153   ACACGTGT
AC RSP01283   Mean Expected Number 0.000   -strand    -54 :  -70   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    -56 :  -72   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    -58 :  -74   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    -60 :  -76   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    -62 :  -78   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand    -64 :  -80   GAGAGAGAGAGAGAGAA

  Totally      23 motifs of     9 different REs have been found


Description of REs found

  253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown
  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
  801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
  940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF
  978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown