> PLPR0465 ..AC:AJ288901.1 ..OS:Dendrobium grex Madame Thong-IN ..GENE:DOMADS1 ..PROD:MADS box protein DOMADS1 ..[ -200:  +51]  ..CDS:  +65 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.28   G -  0.20   T -  0.27   C -  0.25

      1  ttaggggttt ctctctctct ctctctctct ctctcctttc tctataacca
     51  cttttaccac ccacaacact acgagagtaa aagataaaaa ggagaaggca
    101  aatggggaag tagggcaacg aatggggcct cccctcttca cgtcttgctt
    151  tcatggccta aaaatggaaa aaatgaatgc ctcatctctt ccctcagagg
    201  AAGGAAACTT AGCTTTCTGA TCTCCAGTGT TTTAGCTGAG AACGAAGGGA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00653   Mean Expected Number 0.003   +strand   -174 : -164   cTCTCTCTCCT
AC RSP00864   Mean Expected Number 0.001   -strand   -167 : -175   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -169 : -177   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -171 : -179   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -173 : -181   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -175 : -183   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -177 : -185   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -179 : -187   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -181 : -189   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   -strand   -183 : -191   AGAGAGAGA
AC RSP00865   Mean Expected Number 0.001   -strand   -165 : -173   GGAGAGAGA
AC RSP01283   Mean Expected Number 0.000   -strand   -166 : -182   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand   -168 : -184   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand   -170 : -186   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand   -172 : -188   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand   -174 : -190   GAGAGAGAGAGAGAGAg
AC RSP01283   Mean Expected Number 0.000   -strand   -176 : -192   GAGAGAGAGAGAGAGAA

  Totally      17 motifs of     4 different REs have been found


Description of REs found

  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
  801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown