> PLPR0468 ..AC:AJ223307.1 ..OS:Brassica napus ..GENE:iMyAP ..PROD:myrosinase-associated protein ..[ -200: +51] ..CDS: +34 ..TSS:201 (+1) # Alternative TSS(s): -3 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.39 C - 0.20
1 tcacaccgct gtcactttgt tttttatata taattatatt ttttgtcagc
51 atatatatta caagcattat ttcttttctg caatttcaca tgttttagac
101 atgttacatt caacaaaact tgtcatttaa aactgtatta tttataccta
151 tttttgcttc aaaTATATAT Ataaatctag tagtggacac gggaacttat
201 CAAACATATC TTACCAGCCT CTGTTCCACA ACAATGGCAA CCACCTTCAG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00880 Mean Expected Number 0.001 +strand +32 : +41 CAAtGGCAAC
AC RSP01208 Mean Expected Number 0.000 -strand +37 : +26 CCATTGTTGTGG
AC RSP01463 Mean Expected Number 0.005 -strand -25 : -37 ATTTATATATaTA
AC RSP01469 Mean Expected Number 0.008 +strand -115 : -106 TCACATGTtT
AC RSP01755 Mean Expected Number 0.002 +strand +38 : +45 CAACCACC
Totally 5 motifs of 5 different REs have been found
Description of REs found
816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family
1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY
1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1
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