> PLPR0469 ..AC:AB006777.1 ..OS:Arabidopsis thaliana ..GENE:vsp1 ..PROD:vegetative storage protein ..[ -200:  +51]  ..CDS:  +40 ..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.12   T -  0.26   C -  0.25

      1  tttagcacag tctcaacgtg ctctaaaaac gagtggtgta agtgaaaata
     51  tctcgttggt tacaagcata atgggaccaa caagcatttg catcactcga
    101  agccatacgt acacttatct ccgcattttc ccatcggtct tcataagtaa
    151  tcatacctaa cccacctcat TATATAATac caccctttgt gtcacacaaa
    201  TAAACACCAT AAACTAAACA ATAAACCATA CAAAAAAATA TGAAAATCCT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00597   Mean Expected Number 0.007   -strand     +5 :   -7   GTTtATTTGTGT
AC RSP00635   Mean Expected Number 0.001   -strand   -123 : -130   GGTCCCAT
AC RSP00866   Mean Expected Number 0.002   -strand   -180 : -187   GCACGTTG
AC RSP01601   Mean Expected Number 0.006   -strand   -154 : -161   TTTCACTT

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown
  611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown
  802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown
 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format