> PLPR0469 ..AC:AB006777.1 ..OS:Arabidopsis thaliana ..GENE:vsp1 ..PROD:vegetative storage protein ..[ -200: +51] ..CDS: +40 ..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.26 C - 0.25
1 tttagcacag tctcaacgtg ctctaaaaac gagtggtgta agtgaaaata
51 tctcgttggt tacaagcata atgggaccaa caagcatttg catcactcga
101 agccatacgt acacttatct ccgcattttc ccatcggtct tcataagtaa
151 tcatacctaa cccacctcat TATATAATac caccctttgt gtcacacaaa
201 TAAACACCAT AAACTAAACA ATAAACCATA CAAAAAAATA TGAAAATCCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00597 Mean Expected Number 0.007 -strand +5 : -7 GTTtATTTGTGT
AC RSP00635 Mean Expected Number 0.001 -strand -123 : -130 GGTCCCAT
AC RSP00866 Mean Expected Number 0.002 -strand -180 : -187 GCACGTTG
AC RSP01601 Mean Expected Number 0.006 -strand -154 : -161 TTTCACTT
Totally 4 motifs of 4 different REs have been found
Description of REs found
573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown
611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown
802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown
1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
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