> PLPR0471 ..AC:Y14572.1 ..OS:Solanum tuberosum ..GENE:phyB ..PROD:phytochrome B ..[ -200:  +51]  ..CDS:  +74 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.37   G -  0.14   T -  0.33   C -  0.16

      1  ggcagtttct taaatttgaa gaggtaaaaa agtatttcag agaaaaaaaa
     51  caaaaaatac tattggacaa acaggtccac catattgctt caattactgc
    101  aactagtata aaatttgtga caaccccatt tctgtattca accaaaaatt
    151  caatcttttt tggagtttcc caaaagtcag ttttttttcc ctcaactgaa
    201  TTTGTTTTAG GGTTTTAAAA TTGACAAGTT TTTCCATGTA ATAGCAAGAA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00260   Mean Expected Number 0.009   +strand     +6 :  +12   TTTAGGG
AC RSP00279   Mean Expected Number 0.001   +strand     +7 :  +15   TTAGGGTTT
AC RSP00369   Mean Expected Number 0.001   -strand    +15 :   +7   AAACCCTAA
AC RSP00405   Mean Expected Number 0.003   +strand    -42 :  -35   TTTGGAGT
AC RSP01250   Mean Expected Number 0.004   +strand    -56 :  -47   AAAATTCAAT
AC RSP01303   Mean Expected Number 0.002   -strand    +16 :   +7   aAAACCCTAA

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
  270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC:  RSP00448
  354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
  387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown
 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C
 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown

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