> PLPR0471 ..AC:Y14572.1 ..OS:Solanum tuberosum ..GENE:phyB ..PROD:phytochrome B ..[ -200: +51] ..CDS: +74 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.33 C - 0.16
1 ggcagtttct taaatttgaa gaggtaaaaa agtatttcag agaaaaaaaa
51 caaaaaatac tattggacaa acaggtccac catattgctt caattactgc
101 aactagtata aaatttgtga caaccccatt tctgtattca accaaaaatt
151 caatcttttt tggagtttcc caaaagtcag ttttttttcc ctcaactgaa
201 TTTGTTTTAG GGTTTTAAAA TTGACAAGTT TTTCCATGTA ATAGCAAGAA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00260 Mean Expected Number 0.009 +strand +6 : +12 TTTAGGG
AC RSP00279 Mean Expected Number 0.001 +strand +7 : +15 TTAGGGTTT
AC RSP00369 Mean Expected Number 0.001 -strand +15 : +7 AAACCCTAA
AC RSP00405 Mean Expected Number 0.003 +strand -42 : -35 TTTGGAGT
AC RSP01250 Mean Expected Number 0.004 +strand -56 : -47 AAAATTCAAT
AC RSP01303 Mean Expected Number 0.002 -strand +16 : +7 aAAACCCTAA
Totally 6 motifs of 6 different REs have been found
Description of REs found
253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448
354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown
1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C
1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown
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