> PLPR0472 ..AC:Y14572.1 ..OS:Solanum tuberosum ..GENE:phyB ..PROD:phytochrome B ..[ -200: +51] ..CDS: +137 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.32 C - 0.16
1 tacgcaaagt aaaagtatag gtagttaatc aactaaccga gctactaata
51 tttttggagt ataggcagtt tcttaaattt gaagaggtaa aaaagtattt
101 cagagaaaaa aaacaaaaaa tactATTGGa caaacaggtc caccatattg
151 cttcaattac tgcaactagT ATAAAATttg tgacaacccc atttctgtat
201 TCAACCAAAA ATTCAATCTT TTTTGGAGTT TCCCAAAAGT CAGTTTTTTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00405 Mean Expected Number 0.003 +strand -148 : -141 TTTGGAGT
AC RSP00405 Mean Expected Number 0.003 +strand +22 : +29 TTTGGAGT
AC RSP00960 Mean Expected Number 0.006 +strand -171 : -164 CAACTAAC
AC RSP01250 Mean Expected Number 0.004 +strand +8 : +17 AAAATTCAAT
Totally 4 motifs of 3 different REs have been found
Description of REs found
387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown
885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB
1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C
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