> PLPR0473 ..AC:U45858.1 ..OS:Zea mays ..GENE:gpc2 ..PROD:glyceraldehyde-3-phosphate dehydrogenase ..[ -200: +51] ..CDS: +76 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.21 G - 0.14 T - 0.27 C - 0.38
1 tgcccatgcg tcttctagag aaaggcggac ggacaggtca cccccgcacc
51 tcattccagg agttgcattt cgctttctcc tttatttatt tataccaata
101 aaaaataaat ccgccttttc tcctccctat cgtgtgtctc ctctcgccgg
151 ctttaaaaac gcacacaagc gctaaaaccc tctccaccgt ccacctcagc
201 TCCCATATCC GCTCCCCTAC CTCTCCAGCA TCCTCCCGTC TCCGTCGTCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00210 Mean Expected Number 0.001 +strand -11 : +1 tCCACCTCAGCT
AC RSP00284 Mean Expected Number 0.008 -strand -169 : -174 CCGTCC
AC RSP01039 Mean Expected Number 0.006 +strand -181 : -176 GAAAGG
Totally 3 motifs of 3 different REs have been found
Description of REs found
203. Group TF: MAT2 (ROM2) /AC: RSP00210//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,B /TF: MAT2 (ROM2)
275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856
963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family
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