> PLPR0474 ..AC:U45859.1 ..OS:Zea mays ..GENE:gpc4 ..PROD:glyceraldehyde-3-phosphate dehydrogenase ..[ -200:  +51]  ..CDS:  +68 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.16   G -  0.20   T -  0.22   C -  0.42

      1  gtttctcctc cgggccccac ttgtcacccg cacgtcctca cgtttccgcc
     51  ccaccatttt tgccgaaacc aggttccgcg acttcgggtg ggcccagcca
    101  gcagcagccg cagccgcaac cgcagtcgca gccgcagccg ccagtcccca
    151  gtccctttTA TATATGgccc cttcgatcca ttggccgcat cacactcgcc
    201  AACCCCGTCA TCGATCTCGT TTCAAATCCA TCCATCCTCG TTTCCTCCGT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00018   Mean Expected Number 0.004   +strand   -145 : -139   ATTTTTG
AC RSP00146   Mean Expected Number 0.002   +strand    -43 :  -37   TTATATA
AC RSP00566   Mean Expected Number 0.004   +strand    -47 :  -38   CCTTtTATAT
AC RSP01115   Mean Expected Number 0.004   -strand   -139 : -145   CAAAAAT
AC RSP01351   Mean Expected Number 0.001   -strand   -104 : -114   CTGGGCCCaCC
AC RSP01599   Mean Expected Number 0.001   +strand    +20 :  +27   TTTCAAAT

  Totally       6 motifs of     6 different REs have been found


Description of REs found

   17. Group TF: SEF4 /AC: RSP00018//OS: Glycine max /GENE: beta-conglycinin/RE: SEF4 /TF: SEF4
  142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
  542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown
 1034. Group RE: CCAAT box-like motif 2 /AC: RSP01115//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 2 /TF: unknown
 1233. Group TF: CPRF1 /AC: RSP01351//OS: Arabidopsis thaliana /GENE: APX1/RE: DNase I footprint /TF: CPRF1
 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown