> PLPR0475 ..AC:M21415.1 ..OS:Arabidopsis thaliana ..GENE:ABT 4 ..PROD:beta-tubulin-4 ..[ -200: +51] ..CDS: +112 ..TSS:201 (+1) # Alternative TSS(s): +11 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.25 C - 0.17
1 agacaagtgg gacagtacag atatattttg aaatcctccg ctgtcataca
51 gcgcagagta caaaaacaaa ttatctaaaa ctatcatgtt acaatgtaca
101 agataaaaca aacataagga CCAATttgaa aataactatt ttagaaaact
151 tattgaagaa gacgtaaacT ATATATAgct gattattacc tattcaacaa
201 ATCCCTCTTT TTAAACCTAT TCAAAGCCAA GGACAAGAAA AAAAAAAAAG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00056 Mean Expected Number 0.002 -strand -190 : -199 cCCACTTGTC
AC RSP00522 Mean Expected Number 0.004 -strand -191 : -197 CCACTTG
AC RSP00891 Mean Expected Number 0.006 -strand -172 : -180 AAAATATAT
AC RSP01720 Mean Expected Number 0.002 +strand -43 : -32 gAAGACGTAAAC
Totally 4 motifs of 4 different REs have been found
Description of REs found
55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family
1528. Group TF: STF1/HY5 /AC: RSP01720//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: C/A-box /TF: STF1/HY5
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