> PLPR0479 ..AC:L36819.1 ..OS:Oryza sativa (japonica cultivar-group) Gt2 ..PROD:glutelin 2 ..[ -200:  +51]  ..CDS:  +39 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.11   T -  0.29   C -  0.23

      1  tgtcatattg caaaagaaag agagaaagaa caacacaaat gatgtgtcaa
     51  ttacacatcc atcattatcc atccaccttc cgtgtaccac acttcatata
    101  tcatgagtca cttcatgtct ggacattaac aaactctatc ttaacattca
    151  aatgcatgag actttatctc acTATAAATG cacaatgatt tagcattgtt
    201  TCTCACAAAA CCATTCAAGT TCATTAGTCA TACAACAACA TGGCATCCAT
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00190   Mean Expected Number 0.008   +strand    -97 :  -91   TGAGTCA
AC RSP00192   Mean Expected Number 0.005   +strand    -74 :  -63   TAACAAACTCTA
AC RSP00193   Mean Expected Number 0.000   +strand   -103 :  -86   ATATCATGAGTCACTTCA
AC RSP00195   Mean Expected Number 0.001   +strand   -122 : -112   TCCGTGTACCA
AC RSP00642   Mean Expected Number 0.010   +strand    -26 :  -19   TAAATGCA
AC RSP00691   Mean Expected Number 0.000   +strand   -124 : -110   CTTcCGTGTACCACA
AC RSP00694   Mean Expected Number 0.001   +strand    -73 :  -61   AACAAACTCTATC
AC RSP00861   Mean Expected Number 0.001   +strand   -186 : -178   AGAAAGAGA
AC RSP00961   Mean Expected Number 0.004   +strand   -192 : -185   TGCAAAAG
AC RSP01017   Mean Expected Number 0.004   -strand     +3 :   -5   AGAAACAA
AC RSP01470   Mean Expected Number 0.009   -strand    -42 :  -51   TCATGCATtT

  Totally      11 motifs of    11 different REs have been found


Description of REs found

  184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC:  RSP00666  RSP00959
  185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown
  186. Group RE: Box I /AC: RSP00193//OS: Oryza sativa /GENE: Gt2/RE: Box I /TF: unknown ||Identical REs AC:  RSP00690
  188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown
  617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
  657. Group RE: Box II /AC: RSP00691//OS: Oryza sativa /GENE: Gt1/RE: Box II /TF: unknown
  660. Group RE: AACAA motif /AC: RSP00694//OS: Oryza sativa /GENE: Gt1/RE: AACAA motif /TF: unknown ||Identical REs AC:  RSP01062
  797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1
  886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF
  942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)

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