> PLPR0479 ..AC:L36819.1 ..OS:Oryza sativa (japonica cultivar-group) Gt2 ..PROD:glutelin 2 ..[ -200: +51] ..CDS: +39 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.29 C - 0.23
1 tgtcatattg caaaagaaag agagaaagaa caacacaaat gatgtgtcaa
51 ttacacatcc atcattatcc atccaccttc cgtgtaccac acttcatata
101 tcatgagtca cttcatgtct ggacattaac aaactctatc ttaacattca
151 aatgcatgag actttatctc acTATAAATG cacaatgatt tagcattgtt
201 TCTCACAAAA CCATTCAAGT TCATTAGTCA TACAACAACA TGGCATCCAT
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00190 Mean Expected Number 0.008 +strand -97 : -91 TGAGTCA
AC RSP00192 Mean Expected Number 0.005 +strand -74 : -63 TAACAAACTCTA
AC RSP00193 Mean Expected Number 0.000 +strand -103 : -86 ATATCATGAGTCACTTCA
AC RSP00195 Mean Expected Number 0.001 +strand -122 : -112 TCCGTGTACCA
AC RSP00642 Mean Expected Number 0.010 +strand -26 : -19 TAAATGCA
AC RSP00691 Mean Expected Number 0.000 +strand -124 : -110 CTTcCGTGTACCACA
AC RSP00694 Mean Expected Number 0.001 +strand -73 : -61 AACAAACTCTATC
AC RSP00861 Mean Expected Number 0.001 +strand -186 : -178 AGAAAGAGA
AC RSP00961 Mean Expected Number 0.004 +strand -192 : -185 TGCAAAAG
AC RSP01017 Mean Expected Number 0.004 -strand +3 : -5 AGAAACAA
AC RSP01470 Mean Expected Number 0.009 -strand -42 : -51 TCATGCATtT
Totally 11 motifs of 11 different REs have been found
Description of REs found
184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959
185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown
186. Group RE: Box I /AC: RSP00193//OS: Oryza sativa /GENE: Gt2/RE: Box I /TF: unknown ||Identical REs AC: RSP00690
188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown
617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
657. Group RE: Box II /AC: RSP00691//OS: Oryza sativa /GENE: Gt1/RE: Box II /TF: unknown
660. Group RE: AACAA motif /AC: RSP00694//OS: Oryza sativa /GENE: Gt1/RE: AACAA motif /TF: unknown ||Identical REs AC: RSP01062
797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1
886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
Download This Page
Download Promoter Sequence in FASTA Format