> PLPR0480 ..AC:X05823 ..OS:Triticum aestivum ..GENE: cab-1 ..PROD:chlorophyll a/b-binding protein ..[ -200: +51] ..CDS: +21 f |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.28 G - 0.13 T - 0.26 C - 0.33
1 gagccttagc cctaaccata gccacaagta catctcatcc atttaaggcc
51 tctgcgtgca ccaatggcat ccaagctgca gatttctttt caccaccgtc
101 tctcttgtca gctgtcacca agcaccaaCC AATtaatttc tctatattct
151 tgttccctca aggctcaagc tcTTTAAATA gctccataca atctcctctt
201 AAACCATCTC CACACACTCA AGCCACACTA TTGGAGAACA CACAGGGACA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00304 Mean Expected Number 0.008 -strand -84 : -91 TGACAGCT
AC RSP00439 Mean Expected Number 0.008 +strand -57 : -50 ATATTCTT
AC RSP00713 Mean Expected Number 0.008 -strand -87 : -93 CAGCTGA
AC RSP01369 Mean Expected Number 0.000 +strand -174 : -132 AGTACATCTCATCCATTT-- ** bp --TGCACCAATGGCA
AC RSP01369 Mean Expected Number 0.000 +strand -144 : -114 TGCACCAATGGCA-- +6 bp --CTGCAGATTTCT
Totally 5 motifs of 5 different REs have been found
Description of REs found
291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP
419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown
679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC
1253. Group RE: cab-CMA5 /AC: RSP01369//OS: Triticum aestivum /GENE: cab-1/RE: cab-CMA5 /TF: unknown
1289. Group RE: cab-CMA5 /AC: RSP01369//OS: Triticum aestivum /GENE: cab-1/RE: cab-CMA5 /TF: unknown
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