> PLPR0481 ..AC:X62799.1 ..OS:Glycine max ..GENE:hsp70 ..PROD:heat shock 70 kDa protein ..[ -200: +51] ..CDS: +106 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.11 T - 0.33 C - 0.27
1 aataaagtca acttcaacta aactgctaaa gtgaatattt ctcgatttct
51 ctcttattct gttttctttc tggaacatga tcaaacactc gagaactctc
101 tagccagctc tgctactttc ttcctaatct cgtatattct cgaactcact
151 ctaatttcta acgcggacTA TAAATTgcgg tttgggttct ctctctctcc
201 TCACTCACAA CAATATCTGC ACATAAAAAA CCACTCTACA AAACTCTCCA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00574 Mean Expected Number 0.009 -strand -140 : -147 CAGAATAA
AC RSP00860 Mean Expected Number 0.008 -strand -130 : -138 AGAAAGAAA
AC RSP00864 Mean Expected Number 0.005 -strand -3 : -11 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.005 -strand -5 : -13 AGAGAGAGA
AC RSP00865 Mean Expected Number 0.004 -strand -1 : -9 GGAGAGAGA
AC RSP00918 Mean Expected Number 0.008 -strand -189 : -198 GTTGACTTTA
AC RSP01733 Mean Expected Number 0.006 -strand -35 : -40 CCGCGT
Totally 7 motifs of 6 different REs have been found
Description of REs found
550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2
1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3
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