> PLPR0482 ..AC:X71020.1 ..OS:Nicotiana tabacum ..GENE:Npg1 ..PROD:polygalacturonase ..[ -200: +51] ..CDS: +81 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.33 C - 0.17
1 tgtggtacag attgttatgg aatttccttt ccccgtggtt ttacttagag
51 aaactcttaa ttagtaaaac aaagtaacta atttccaacg tcttctccgc
101 aacttaatct gtggtataga acaggtacaa agttgttgta tagtaccaaa
151 tttttcgtga tgacacTATA AAAGggcttc aatgtattca gtttacattt
201 CAGAAAACTT TGAAATACTA CCCCAAAAAA CTTCAAAAAA AAAAATTTGA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00628 Mean Expected Number 0.008 -strand -185 : -192 AACAATCT
AC RSP01600 Mean Expected Number 0.010 -strand +15 : +8 TTTCAAAG
Totally 2 motifs of 2 different REs have been found
Description of REs found
604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1
1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
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