> PLPR0483 ..AC:U26944.1 ..OS:Arabidopsis thaliana ..GENE:sen1 ..PROD:senescence-associated protein ..[ -200: +51] ..CDS: +52 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16
1 ctcacgaggc accgagttgg acttatcatg attcattatc tacgcattgt
51 ttacattttg gaatcgactt tggtacataa ttgaatttat ccatagaaat
101 gatagagact cgaagatcgg acataaaact tgctgacgtg agacccatac
151 ctttgtgtct gtatgtatTA TATAAAcgct atataactaa gagaagaagt
201 ATCTAAGTAG CATCAAAGCA TTCTAAAAGA AGTTTCAAAG AAGAAGTGAA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00916 Mean Expected Number 0.003 +strand -69 : -60 GCTGACGTGA
AC RSP00917 Mean Expected Number 0.003 +strand -69 : -60 GCTGACGTGA
AC RSP01475 Mean Expected Number 0.001 -strand -140 : -148 CCAAAATGT
AC RSP01600 Mean Expected Number 0.009 +strand +33 : +40 TTTCAAAG
Totally 4 motifs of 4 different REs have been found
Description of REs found
847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2
1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown
1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
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