> PLPR0484 ..AC:X76933.1 ..OS:Hordeum vulgare ..GENE:LEA B19.1 ..PROD:late embryogenic abundant protein B19.1 ..[ -200: +51] ..CDS: +90 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.20 G - 0.25 T - 0.16 C - 0.39
1 gttccggcgg cttcgtcagt cctcggataa ccatgcccta cgcgcgtgcg
51 caggcatgtt tccatgcacg ctcgcatgtg tcgcctccaa gagcctcgca
101 tggggcgcgt cgacacctca gaggcacacg cgccggcact cggcgccgtg
151 acgcaccctc ctccgccgcT ATAAAAAggc ggcgccatcg ctgcctcctc
201 CATCACCAGC ATCACGCAAT CACAAACGCC GTTCAAGCAG CCACACAACG
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00004 Mean Expected Number 0.009 -strand -26 : -31 TTTATA
AC RSP00147 Mean Expected Number 0.009 +strand -31 : -26 TATAAA
AC RSP00331 Mean Expected Number 0.003 +strand -143 : -135 GTTTCCATG
AC RSP01469 Mean Expected Number 0.002 +strand -129 : -120 TCgCATGTGT
Totally 4 motifs of 4 different REs have been found
Description of REs found
4. Group RE: Motif g /AC: RSP00004//OS: Pisum sativum /GENE: PSPAL2/RE: Motif g /TF: unknown
143. Group RE: TATA2 /AC: RSP00147//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA2 /TF: unknown
317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
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