> PLPR0486 ..AC:X81087.1 ..OS:Hordeum vulgare ..GENE:LEA B19.3 ..PROD:late embryogenic abundant protein B19.3 ..[ -200:  +51]  ..CDS:  +98 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.24   G -  0.23   T -  0.18   C -  0.34

      1  tatccgcttc ctcggacaac cgtgcacact cattcggtgc ccatgcaagt
     51  taccacgtgt cgtccaacca gaggcttgca tgcacgacac gtcttagact
    101  cttgatacag caggagcgcg gagaggtaca cgcgccggct cctagcgcgc
    151  caagctcctc cttgtcggcT ATATAAAcgc gacgtcgcta gctcctccgc
    201  CATCAGCATC AGGCAATCAC AGAGCACCAA GAGCAGTCGC ATACCAAAAC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00062   Mean Expected Number 0.000   +strand   -159 : -142   CATGCA-- +6 bp --CACGTG
AC RSP00107   Mean Expected Number 0.007   -strand   -119 : -125   CATGCAA
AC RSP00146   Mean Expected Number 0.005   -strand    -25 :  -31   TTATATA
AC RSP00204   Mean Expected Number 0.006   -strand   -140 : -149   GACACGTGGt
AC RSP00232   Mean Expected Number 0.006   +strand   -112 : -103   ACGTCtTAGA
AC RSP00340   Mean Expected Number 0.008   +strand   -149 : -140   aCCACGTGTC
AC RSP00819   Mean Expected Number 0.005   +strand   -115 : -106   GaCACGTCTT
AC RSP01255   Mean Expected Number 0.004   -strand   -141 : -148   ACACGTGG

  Totally       8 motifs of     8 different REs have been found


Description of REs found

   61. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 1 & box 2) /TF: ABI3
  105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown
  142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1