> PLPR0488 ..AC:U46545.1 ..OS:Helianthus annuus ..GENE:hsp17.7 G4 ..PROD:17.7 kDa heat-shock protein gene ..[ -200: +51] ..CDS: +79 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.09 T - 0.26 C - 0.31
1 taaagacgcc gagatatcta tggcaataat ggcataacac gtatatcaaa
51 agcccacctc actatgcctc ttttcaaacc tctggaacct ttcagaaata
101 tccatatcca tttcttcaag cttcaagACA ATcctagaaa ttactcactc
151 tccccttctt cccatcTATA AATGcccacc cccaatcaca tccatctctc
201 AGACAACACA CTTCACAACA TTGAAAGCAA GCATTCATCA TTCATAAACA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00833 Mean Expected Number 0.000 +strand -89 : -57 TTCTTCAAGCTTCAAGACAATCCTAGAAATTAC
AC RSP00834 Mean Expected Number 0.000 +strand -121 : -99 CTCTGGAACCTTTCAGAAATATC
AC RSP01288 Mean Expected Number 0.006 -strand -157 : -164 ATACGTGT
AC RSP01702 Mean Expected Number 0.007 +strand -165 : -156 AACACGTATa
AC RSP01715 Mean Expected Number 0.001 +strand -166 : -155 tAACACGTATAT
Totally 5 motifs of 5 different REs have been found
Description of REs found
779. Group RE: HSE1 /AC: RSP00833//OS: Helianthus annuus /GENE: Ha hsp17.7 G4/RE: HSE1 /TF: unknown
780. Group RE: HSE2 /AC: RSP00834//OS: Helianthus annuus /GENE: Ha hsp17.7 G4/RE: HSE2 /TF: unknown ||Identical REs AC: RSP01243
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown
1523. Group TF: STF1/HY5 /AC: RSP01715//OS: Arabidopsis thaliana /GENE: ARF6 (At1g30330)/RE: G/A-box /TF: STF1/HY5
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