> PLPR0490 ..AC:L44583.1 ..OS:Arabidopsis thaliana ..GENE:AVA-P3 ..PROD:vacuolar H+-pumping ATPase 16 kDa proteolipid ..[ -200: +51] ..CDS: +152 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.27 G - 0.23 T - 0.30 C - 0.20
1 tattgtctat ccatcttact cgtaaaaatg caaagacgtt tctgtttcaa
51 tctctccaaa tataagccaa acaggatatg attttggttc tggtggatca
101 ttctagtggg ccgtatgatg ggcctaagaa taaggcaact aatctgggtc
151 gaatacgggt agacccgggt tgagatcccg acgtgtggct tcgctgttgt
201 AGTAGTAGTA TATCTCATCA TCAATCAGGC TTTTGAGCCT CGGAAACTCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00110 Mean Expected Number 0.003 -strand -14 : -21 CACACGTC
AC RSP00941 Mean Expected Number 0.006 +strand -156 : -149 TTTCAATC
AC RSP01594 Mean Expected Number 0.006 -strand -149 : -156 GATTGAAA
Totally 3 motifs of 3 different REs have been found
Description of REs found
108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown
870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF
1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown
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