> PLPR0492 ..AC:Z95153.2 ..OS:Helianthus annuus ..GENE:hsp17.6 G1 ..PROD:17.6 kDa class I small heat-shock protein HSP17.6 ..[ -200: +51] ..CDS: +35 ..TSS:201 (+1) # Alternative TSS(s): -8 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.42 G - 0.07 T - 0.25 C - 0.25
1 aatagttata taaaaaataa aacatttata aacgatatat actaagagtt
51 ccacataata atccgtagaa aaaaaagctt attctctatc tgtccagata
101 agtacagaat atttcagaac actactacgt tgGCAATatc caacagaagc
151 cacctcaaca cttccctccT ATAAATAcca ccattcatat ccactcacac
201 AACACATTAA CACTCACAAC TCAAAAACAT TCACCATGTC AATCATTCCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00011 Mean Expected Number 0.002 +strand -124 : -115 GCTTATTCTC
AC RSP00132 Mean Expected Number 0.002 +strand -52 : -45 GCCACCTC
AC RSP00509 Mean Expected Number 0.004 +strand -31 : -20 TATAAATACCAc
AC RSP00850 Mean Expected Number 0.001 -strand -67 : -72 GCCAAC
AC RSP01290 Mean Expected Number 0.000 +strand -105 : -81 AGATAAGTACAGAATATTTCAGAAC
AC RSP01301 Mean Expected Number 0.003 +strand -32 : -23 CTATAAATAC
Totally 6 motifs of 6 different REs have been found
Description of REs found
11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown
130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2
485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown
1187. Group RE: HSE /AC: RSP01290//OS: Helianthus annuus /GENE: Ha hsp17.6 G1/RE: HSE /TF: unknown
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
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