> PLPR0494 ..AC:X83076.1 ..OS:Zea mays ..GENE:Fer1 ..PROD:ferritin ..[ -200:  +51]  ..CDS: +106 ..TSS:201 (+1) # Alternative TSS(s): +6 |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.24   G -  0.13   T -  0.22   C -  0.42

      1  acccttgtag taacggcgta taccaaagga aaagctcaaa aaaaatggac
     51  gcctccacca tccagaaata tctccccagt cccccgcccg ccacgagccc
    101  tccacgcgct ccctccgcct tctccaaatc tcagccgtcc acgtgtctcc
    151  aatctgctac ccccacgcgc cTATATTTAt ccctttcgtt cctccaagca
    201  CAGCCGCACA ATCCATCCAT CCATCTATTC TCCAGTCCAC CCATTCCATT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00068   Mean Expected Number 0.005   -strand    -54 :  -63   GACACGTgGA
AC RSP00188   Mean Expected Number 0.003   +strand    -63 :  -54   TCcACGTGTC
AC RSP00204   Mean Expected Number 0.004   -strand    -54 :  -63   GACACGTGGa
AC RSP00340   Mean Expected Number 0.010   +strand    -63 :  -54   TCCACGTGTC
AC RSP00524   Mean Expected Number 0.008   -strand    -55 :  -61   ACACGTG
AC RSP00682   Mean Expected Number 0.004   -strand    -54 :  -63   GaCACGTGGA
AC RSP00728   Mean Expected Number 0.000   +strand   -111 :  -96   GCCACGAGCCCTCCAC
AC RSP01035   Mean Expected Number 0.008   +strand    -60 :  -54   ACGTGTC
AC RSP01081   Mean Expected Number 0.005   +strand    +12 :  +23   TCCAtCCATCCA
AC RSP01255   Mean Expected Number 0.003   -strand    -55 :  -62   ACACGTGG
AC RSP01274   Mean Expected Number 0.008   +strand    -63 :  -54   TCCACGTgTC
AC RSP01722   Mean Expected Number 0.000   +strand    -64 :  -53   gTCCACGTGTCT

  Totally      12 motifs of    12 different REs have been found


Description of REs found

   67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown
  182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  691. Group RE: IDRS /AC: RSP00728//OS: Nicotiana tabacum /GENE: ZmFer1/RE: IDRS /TF: unknown
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
  999. Group TF: DcMYB1 /AC: RSP01081//OS: Daucus carota /GENE: DcPAL1/RE: box-L3 /TF: DcMYB1
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5