> PLPR0496 ..AC:L21976.1 ..OS:Petunia hybrida ..GENE:ACO1 ..PROD:1-aminocyclopropane-1-carboxylate oxidase ..[ -200: +51] ..CDS: +78 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.35 C - 0.23
1 ttctctaata attaactcca atttcaaata cttacaactt tcttttatta
51 aacagtacta agtatactat ttactattac tatacagtga atcgacttgt
101 attacttgtt ggccagactg gaaatacgat actatacctt atacacactt
151 actcctactt tctcccTATA AATAgccaaa gaaagcctca ctttctggca
201 TAGAAAAATC ACATTCATCT TCTGTTATTC ACACACTATA TACCTAAAAA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00355 Mean Expected Number 0.008 -strand +27 : +20 TAACAGAA
AC RSP00850 Mean Expected Number 0.003 -strand -88 : -93 GCCAAC
AC RSP01072 Mean Expected Number 0.009 +strand -100 : -91 ATTACtTGTT
AC RSP01209 Mean Expected Number 0.007 -strand -16 : -25 CTTTCTTTGG
Totally 4 motifs of 4 different REs have been found
Description of REs found
340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown
790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown
990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154
1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
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