> PLPR0497 ..AC:AB012637.1 ..OS:Nicotiana sylvestris ..GENE:Lhcb1*2 ..PROD:light harvesting chlorophyll a/b-binding protein ..[ -200: +51] ..CDS: +61 ..TSS:201 (+1) # Alternative TSS(s): +4 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.30 C - 0.21
1 catgggatcg aggacaaatt tggttgggta ccccaagtaa aaatcttgga
51 aaattgatgg tttagcaatt gccaaatgtg catgaactgc tgcccatatg
101 aaatcttgaa ccCCAATgag atcagtgata tagatatcac tagataagga
151 ctctttcatt cttactttcT ATATATAgtg aagctagaat aacttcagct
201 CATCACAACC AACTTTGACA CCTTAAAACT AGCAATCTCT TACTTTCCTC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00016 Mean Expected Number 0.007 -strand -117 : -123 CATGCAC
AC RSP00085 Mean Expected Number 0.003 +strand -35 : -20 TTTCTATATATAGTgA
AC RSP00085 Mean Expected Number 0.003 -strand -20 : -35 TcACTATATATAGAAA
AC RSP01237 Mean Expected Number 0.009 -strand -21 : -30 CaCTATATAT
Totally 4 motifs of 3 different REs have been found
Description of REs found
15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown
83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3
1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown
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