> PLPR0500 ..AC:AB012638.1 ..OS:Nicotiana sylvestris ..GENE:Lhcb1*5 ..PROD:light harvesting chlorophyll a/b-binding protein ..[ -200:  +51]  ..CDS:  +59 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.15   T -  0.31   C -  0.18

      1  cttagatttt ttaaacgtat aaagtatcta caaaaatcta gtcatcttta
     51  acggtgcaga actttgccaa atggaaaaga atgcaaaagg ttacaaattg
    101  tcatccaCCA ATggaaaagc agatatagat attcaaggat aaggtagtct
    151  ttgggcctgt aaattcattT ATATACActt agtacaaagc ccataaaact
    201  CAAGCCTCAA ATCAACTCTT CTTTTTGTGC ATTCAAGAGT TATCATTCTA
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00683   Mean Expected Number 0.002   +strand   -135 : -126   GCCAAaTGGA
AC RSP00741   Mean Expected Number 0.004   +strand   -116 : -105   AAAAGGTTAcAA
AC RSP00742   Mean Expected Number 0.000   -strand   -144 : -155   GCACCGTTAAAg
AC RSP00888   Mean Expected Number 0.010   +strand   -169 : -161   AAAAATCTA
AC RSP00888   Mean Expected Number 0.004   -strand   -190 : -198   AAAAATCTA
AC RSP00961   Mean Expected Number 0.005   +strand   -119 : -112   TGCAAAAG
AC RSP00996   Mean Expected Number 0.006   -strand    +16 :   +7   GTTGATTTGA
AC RSP01013   Mean Expected Number 0.006   +strand   -133 : -124   CAAATGGAaA
AC RSP01718   Mean Expected Number 0.001   +strand   -190 : -179   TTAaACGTATAA

  Totally       9 motifs of     8 different REs have been found


Description of REs found

  652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
  703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1
  704. Group TF: GT-1 /AC: RSP00742//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 2r /TF: GT-1
  820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1
  886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF
  917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2)
  938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
 1526. Group TF: STF1/HY5 /AC: RSP01718//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: G/A-box (1) /TF: STF1/HY5