> PLPR0502 ..AC:AB012639.1 ..OS:Nicotiana sylvestris ..GENE:Lhcb1*7 ..PROD:light harvesting chlorophyll a/b-binding protein ..[ -200: +51] ..CDS: +72 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.32 C - 0.17
1 aaatttgtat tgggttagat tttttagaca aaatgtatct gaaaaaatct
51 agtcatgttt aatggtgctg aactttgtca aatggacaac caagttaaac
101 ttgtcatcca CCAATcagaa aatggataac gatattctag gataaggact
151 ttggtccttc tgagtcattt atatgcactt gatgcaaggc atatgaaact
201 CAAGCAACAA ATCAACTCTT CTTTTTCTGT AGTAGCTGCA GTCAAGACTA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00792 Mean Expected Number 0.005 +strand -1 : +9 tCAAGCAACA
AC RSP00888 Mean Expected Number 0.006 +strand -158 : -150 AAAAATCTA
AC RSP00888 Mean Expected Number 0.005 -strand -177 : -185 AAAAATCTA
AC RSP01013 Mean Expected Number 0.006 +strand -122 : -113 CAAATGGAcA
AC RSP01509 Mean Expected Number 0.001 +strand -91 : -83 ACCAATCAG
AC RSP01757 Mean Expected Number 0.003 +strand +41 : +48 GTCAAGAC
Totally 6 motifs of 5 different REs have been found
Description of REs found
745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown
820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1
938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510
1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B
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