> PLPR0503 ..AC:M11395 ..OS:Glycine max ..GENE:Gmhsp17.5-E ..PROD:heat shock protein ..[ -200: +51] ..CDS: +83 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.29 C - 0.19
1 aaaatagaaa aacctactaa tgtatttatg aatgatgtcc agaagtggaa
51 gaaaaataaa tataatgatg tgtagtaaac aagaaccttg cgtacatggt
101 gtggagaatt caaccaaATT GCaaaaagta ggatttttct ggaacataca
151 agattatcct ttcacttccT TTAAATAcct cgcgtatccc cttcgtcctc
201 GTCAAACGAA GAAAAAAGTT ACCTGTTTGC GATCTCATTA CAATCTCCCT
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00459 Mean Expected Number 0.005 -strand +5 : -5 TTGACGAGGA
AC RSP01163 Mean Expected Number 0.000 +strand -153 : -120 GAAGAAAAATAAATATAATGATGTGTAGTAAACA
AC RSP01164 Mean Expected Number 0.000 +strand -72 : -49 TAGGATTTTTCTGGAACATACAAG
AC RSP01165 Mean Expected Number 0.000 +strand -103 : -90 GGTGTGGAGAATTC
AC RSP01601 Mean Expected Number 0.006 +strand -41 : -34 TTTCACTT
Totally 5 motifs of 5 different REs have been found
Description of REs found
437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2
1075. Group RE: AT-rich region /AC: RSP01163//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: AT-rich region /TF: unknown
1076. Group RE: HSE(1) /AC: RSP01164//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: HSE(1) /TF: unknown
1077. Group RE: HSE(2) /AC: RSP01165//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: HSE(2) /TF: unknown
1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
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