> PLPR0503 ..AC:M11395 ..OS:Glycine max ..GENE:Gmhsp17.5-E ..PROD:heat shock protein  ..[ -200:  +51]  ..CDS:  +83 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.16   T -  0.29   C -  0.19

      1  aaaatagaaa aacctactaa tgtatttatg aatgatgtcc agaagtggaa
     51  gaaaaataaa tataatgatg tgtagtaaac aagaaccttg cgtacatggt
    101  gtggagaatt caaccaaATT GCaaaaagta ggatttttct ggaacataca
    151  agattatcct ttcacttccT TTAAATAcct cgcgtatccc cttcgtcctc
    201  GTCAAACGAA GAAAAAAGTT ACCTGTTTGC GATCTCATTA CAATCTCCCT
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00459   Mean Expected Number 0.005   -strand     +5 :   -5   TTGACGAGGA
AC RSP01163   Mean Expected Number 0.000   +strand   -153 : -120   GAAGAAAAATAAATATAATGATGTGTAGTAAACA
AC RSP01164   Mean Expected Number 0.000   +strand    -72 :  -49   TAGGATTTTTCTGGAACATACAAG
AC RSP01165   Mean Expected Number 0.000   +strand   -103 :  -90   GGTGTGGAGAATTC
AC RSP01601   Mean Expected Number 0.006   +strand    -41 :  -34   TTTCACTT

  Totally       5 motifs of     5 different REs have been found


Description of REs found

  437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2
 1075. Group RE: AT-rich region /AC: RSP01163//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: AT-rich region /TF: unknown
 1076. Group RE: HSE(1) /AC: RSP01164//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: HSE(1) /TF: unknown
 1077. Group RE: HSE(2) /AC: RSP01165//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: HSE(2) /TF: unknown
 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format